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G11.4 Microorganisms and Biotechnology Pa rt 1 2017-2018

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1. Identify the main types of nutrition in microorganismsWhat is aseptic technique? Why is it important to use when working with microbes?

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Слайд 1G11.4 Microorganisms and Biotechnology Part 1 2017-2018
Learning Objectives
11.4.3.1 Identify

the main types of nutrition in microorganisms
11.4.3.2 Describe the features

of metabolism of microorganisms
11.4.3.3 Describe the methods for the preparation of permanent stains.
11.4.3.4 Describe the structure and the working principle of the fermenter
Success Criteria
G11.4 Microorganisms and Biotechnology Part 1 2017-2018 Learning Objectives11.4.3.1 Identify the main types of nutrition in microorganisms11.4.3.2

Слайд 31. Identify the main types of nutrition in microorganisms
What is

aseptic technique?
Why is it important to use when working

with microbes?

1. Identify the main types of nutrition in microorganismsWhat is aseptic technique? Why is it important to

Слайд 4Classification of Nutrition in Microoganisms
Carbon – Autotrophs – carbon dioxide

Heterotrophs –

reduced, preformed organic molecules
Energy
Phototrophs – light
Chemotrophs – oxidation of chemical compounds (organic/inorganic)
Electrons
Lithotrophs – use reduced inorganic compounds as electron donors
Organotrophs – organic compounds
“mixotrophs: they can alter their metabolic patterns in response to the particular environment.

Classification of Nutrition in MicrooganismsCarbon – Autotrophs – carbon dioxide

Слайд 5Lithotrophs are Chemotrophs, they use reduced inorganic compounds as electron

donors
Energy from H2 NH3 NO2

H2S
Lithotrophs are Chemotrophs, they use reduced inorganic compounds as electron donors Energy from  H2  NH3

Слайд 7Nutrient Required for Growth
Carbon – heterotrophs: glucose, fatty acids, alcohols,

hydrocarbons…
Nitrogen – organic: amino acids, peptides, proteins

inorganic: ammonium salts and nitrates
Water – chemical reactions
Growth factors, Vitamins, Mineral salts – positive ions: calcium, potassium, sodium, B vitamins, some in TRACE (small) amounts
Energy – chemical or light
chemotrophs-chemical energy – glucose
phototrophic – light energy: blue green algae bacteria




Nutrients

Nutrient Required for GrowthCarbon – heterotrophs: glucose, fatty acids, alcohols, hydrocarbons…Nitrogen – organic: amino acids, peptides, proteins

Слайд 8
Video’s
Aseptic Technique 6.0 min https://www.youtube.com/watch?v=bRadiLXkqoU
How to make Nutrient

Agar 2.0 min https://www.youtube.com/watch?v=YX_b02KYN9g
Making a Streak plate 3.0 min https://www.youtube.com/watch?v=0heifCiMbfY


Video’s Aseptic Technique 6.0 min  https://www.youtube.com/watch?v=bRadiLXkqoUHow to make Nutrient Agar 2.0 min https://www.youtube.com/watch?v=YX_b02KYN9gMaking a Streak plate

Слайд 9Types of AGAR Media

Types of AGAR Media

Слайд 11Liquid agar cultures of bacteria at the different stages of

growth.
What is happening to the culture at time
=5.5-10 hours?

What

the limiting factors a time
= 4.5 – 5.5 hours?
Liquid agar cultures of bacteria at the different stages of growth.What is happening to the culture at

Слайд 12Serial Dilutions are used to reduce the number of bacterial

colonies from liquid agar culture so they may be easily

counted.
Serial Dilutions are used to reduce the number of bacterial colonies from liquid agar culture so they

Слайд 13Spectrophotomer or a colorimeter measures transmission of light
100 % Transmittance

0 % Absorbance
20 % Transmittance
80 % Absorbance


Used to measure ‘turbidity’
concentration of bacterial in solution

Spectrophotomer or a colorimeter measures transmission of light100 % Transmittance   0 % Absorbance 20 %

Слайд 14Turbidity – the cloudiness shows bacterial growth
Turbidity and Sediment
-death phase

– dead bacteria
precipitate out of solution
Sterile Broth
Significant turbidity
-lots of bacteria
Slight

turbidity
-some bacteria

Dead bacteria

Turbidity – the cloudiness shows bacterial growthTurbidity and Sediment-death phase – dead bacteriaprecipitate out of solutionSterile BrothSignificant

Слайд 15Turbidity affects absorbance

Turbidity affects absorbance

Слайд 162. Describe the features of metabolism in microorganisms
“Metabolism with respect

to oxygen”


1. Obligate anaerobic bacteria
2. Obligate aerobic bacteria
3. Facultative

anaerobes
4. Microaerophiles
5. Aerotolerant
2. Describe the features of metabolism in microorganisms“Metabolism with respect to oxygen” 1. Obligate anaerobic bacteria2. Obligate

Слайд 17Remember? Types of microbe metabolism

Remember? Types of microbe metabolism

Слайд 18Physical Factors that Control Microbe Metabolism
Environment

Physical Factors that Control Microbe MetabolismEnvironment

Слайд 193. Describe the features of the metabolism of microorganisms
Temperature
Oxygen Concentration
pH
Osmotic

Condition

Environment

3. Describe the features of the metabolism of microorganismsTemperatureOxygen ConcentrationpHOsmotic ConditionEnvironment

Слайд 20A – Temperature
Cold 15C psychrophilic
25C psychrotrophs
Warm

37C mesophiles
Hot 60C thermophiles
95C

hyperthermophiles

Environment

A – Temperature	Cold		15C psychrophilic 			   25C psychrotrophs 	Warm 	37C mesophiles 	Hot 		 60C thermophiles

Слайд 21B. Oxygen concentration – METABOLISM
Obligate aerobes – must have oxygen

(aerobic)
Facultative aerobes – prefer oxygen, but do fine without oxygen
Aerotolerant

anaerobes – don’t need oxygen, oxygen doesn’t bother them
Obligate anaerobes – only no oxygen (anaerobic)
Microaerophiles – low concentration of oxygen

Environment

Metabolism

B. Oxygen concentration – METABOLISMObligate aerobes – must have oxygen (aerobic)Facultative aerobes – prefer oxygen, but do

Слайд 22Aerobic and Anaerobic Bacteria can be Identified
by Growing them

in Liquid Culture
??????????????????????????????

Aerobic and Anaerobic Bacteria can be Identified by Growing them in Liquid Culture??????????????????????????????

Слайд 24C. pH
5 and below- acidophiles
7 +/- 1 -

neutrophils
9 and above – alkalphiles
Environment

C. pH 	5 and below- acidophiles 	7 +/- 1 - neutrophils 	9 and above – alkalphiles Environment

Слайд 25Next Lesson –
Practical I Set up a liquid culture

of yeast for observation.
Practical II Plate it on different

nutrient agar dishes

1- Nutrient closed petri dish
2- No nutrient closed petri dish
3- Glucose closed petri dish
4 – No glucose closed petri dish
5 – Nutrient open petri dish
6 - No nutrient open petri dish
72 hours in incubator or 72 hours covered in warm part of room.

Next Lesson – Practical I Set up a liquid culture of yeast for observation. Practical II Plate

Слайд 26C. Osmotic conditions
NaCl tolerant (+) halotolerant

nanhalophiles

NaCl required (15%) halophiles


(15-30%) extreme halophiles

Environment

C. Osmotic conditions 	NaCl tolerant (+) halotolerant 			        nanhalophiles 		NaCl

Слайд 273. Describe the methods for the preparation of permanent stains.


-What is a permanent stain?
-How is a permanent stain

different than a temporary?
-What are some reasons for / against temporary / permanent?


3. Describe the methods for the preparation of permanent stains.  -What is a permanent stain? -How

Слайд 29Terminology – Permanent Stain

Terminology – Permanent Stain

Слайд 30The basic steps of a permanent stain (specimen)
Fixation – treatment

of tissue with chemical agent.
Dehydration & Clearing – removal of

water from tissue sample.
Embedding – Infiltration of tissue sample with paraffin.
Sectioning – Cutting tissue sample by section into specific equal increments.
Mounting and Staining – Placing the tissue sample on adhesive glass slides.
The basic steps of a permanent stain (specimen)Fixation – treatment of tissue with chemical agent.Dehydration & Clearing

Слайд 31FIXATION

FIXATION

Слайд 33DEHYDRATION & CLEARING

DEHYDRATION & CLEARING

Слайд 34EMBEDDING

EMBEDDING

Слайд 35SECTIONING

SECTIONING

Слайд 37MOUNTING AND STAINING

MOUNTING AND STAINING

Слайд 38COMMONLY USED STAINS
Hematoxylin -Specialized stains that differentiate the fibrous components

of the extracellular matrix.

2. Eosin – Stains that differentiate between

acidic and basic cellular components.

3. Toluidine Blue - Metallic salts that precipitate on tissue forming metal deposits.
COMMONLY USED STAINSHematoxylin -Specialized stains that differentiate the fibrous components of the extracellular matrix.2. Eosin – Stains

Слайд 39HISTOCHEMISTRY
Periodic Acid Schiff (PAS) - Is a staining method used

to detect polysaccharides (e.g. glycogen, glycoproteins, glycolipids and mucins in

tissues.

2. Feulgen Reaction - Is used to identify chromosomal material or DNA in cell specimens.

3. Gomori-Takamatsu - a method for localizing the alkaline phosphatase enzyme.

4. Mordant - Is a substance used to set dyes on tissue sections by forming a coordination complex with the dye which then attaches to the tissue. It may be used for intensifying stains in cell or tissue preparations.

5. Counterstain - Is a stain with colour contrasting to the principal stain, making the stained structure more easily visible.
HISTOCHEMISTRYPeriodic Acid Schiff (PAS) - Is a staining method used to detect polysaccharides (e.g. glycogen, glycoproteins, glycolipids

Слайд 40HEMATOXYLIN

HEMATOXYLIN

Слайд 42MASSON'S TRICHOME

MASSON'S TRICHOME

Слайд 43ORCEIN'S ELASTIC STAIN

ORCEIN'S ELASTIC STAIN

Слайд 44WEIGERT'S ELASTIC STAIN

WEIGERT'S ELASTIC STAIN

Слайд 45SILVER STAIN

SILVER STAIN

Слайд 46IRON HEMATOXYLIN STAIN

IRON HEMATOXYLIN STAIN

Слайд 47PERIODIC ACID-SCHIFF

PERIODIC ACID-SCHIFF

Слайд 48WRIGHT AND GIEMSA STAINS

WRIGHT AND GIEMSA STAINS

Слайд 494. Describe the structure and the working principle of

the fermenter

4.  Describe the structure and the working principle of the fermenter

Слайд 50Bacteria Dividing
http://www.cellsalive.com/ecoli.htm

Bacteria Dividinghttp://www.cellsalive.com/ecoli.htm

Слайд 51Asexual Reproduction : Binary Fission
Do you remember?

Asexual Reproduction : Binary FissionDo you remember?

Слайд 52Logarithmic or Sigmoid
Exponential or J-shaped

Logarithmic or Sigmoid Exponential or J-shaped

Слайд 53Microorganisms Standard Growth Curves
Logarithmic or Sigmoid
1. It occurs

when the resources are limited.
2. Population seldom grows beyond the

carrying capacity of ecosystem
3. A stationary or steady phase is reached.
4. Population seldom crashes.

Exponential or J-shaped

1. It occurs when the resources are abundant.
2. Population passes well beyond the carrying capacity of the ecosystem.
3. A stationary or steady phase is seldom achieved.
4. Population crashes ultimately due to mass mortality.
5. It has two phases, lag and log. 
6. It occurs in fewer organisms, e.g., Lemmings, algal bloom.


Microorganisms Standard Growth CurvesLogarithmic or Sigmoid 1. It occurs when the resources are limited.2. Population seldom grows

Слайд 541. Answer the questions about growth curves.
On the blank area

of your Microbiology metabolism worksheet answer the following:

“With respect

to oxygen, explain the main forms of metabolism in microorganisms”.
1. Answer the questions about growth curves.On the blank area of your Microbiology metabolism worksheet answer the

Слайд 55Complete the following table for the two types of growth

curves:
Directions: For each of the following scenarios circle whether the

population growth would best be represented by a logistic or exponential growth curve.
a. a strep bacterium invades your throat and reproduces for 4 hours exponential
b. the flea population on a rat is monitored for 5 weeks with flea powder added logistic
c. loggerhead turtle populations are tracked for 5 years in the Atlantic logistic
d. a lucky yeast cell falls into your glass of grape juice and reproduces for 10 hours exponential
e. bull frog population in a local pond is monitored for 3 seasons logistic

Complete the following table for the two types of growth curves:Directions: For each of the following scenarios

Слайд 60https://www.youtube.com/watch?v=YX_b02KYN9g

https://www.youtube.com/watch?v=YX_b02KYN9g

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